Open DiDeoxy opened 3 years ago
Getting error:
[248444] [2020-10-06 19:13:24.830] [GLnexus] [error] Failed to genotype: NotImplemented: genotyper StringFormatFieldHelper::add_record_data
Config file:
unifier_config: min_AQ1: 0 min_AQ2: 0 min_GQ: 0 monoallelic_sites_for_lost_alleles: true genotyper_config: required_dp: 0 revise_genotypes: false liftover_fields: - orig_names: [DP] name: DP description: '##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth at this position for this sample">' type: int number: basic combi_method: min count: 1 ignore_non_variants: true - orig_names: [FT] name: FT description: '##FORMAT=<ID=FT,Number=1,Type=String,Description="Sample genotype filter indicating if this genotype was called">' type: string number: basic combi_method: semicolon count: 1 ignore_non_variants: true - orig_names: [PS] name: PS description: '##FORMAT=<ID=PS,Number=1,Type=String,Description="Phase set">' type: string number: basic combi_method: missing count: 0 ignore_non_variants: true - orig_names: [PQ] name: PQ description: '##FORMAT=<ID=PQ,Number=1,Type=Integer,Description="Phasing quality">' type: int number: basic combi_method: missing count: 1 ignore_non_variants: true - orig_names: [MQ] name: MQ description: '##FORMAT=<ID=MQ,Number=1,Type=Integer,Description="RMS mapping quality">' type: int number: genotype combi_method: missing count: 1 ignore_non_variants: true
Just looking to merge, not joint genotype.
Getting error:
[248444] [2020-10-06 19:13:24.830] [GLnexus] [error] Failed to genotype: NotImplemented: genotyper StringFormatFieldHelper::add_record_data
Config file:
Just looking to merge, not joint genotype.