Open bopohdr opened 3 years ago
Is it an INFO field or a FORMAT field? The latter is relatively easy (but also VAF could be derived just-in-time from AD rather easily), the former not so much.
Hi,
it is a FORMAT field. I tried manipulating DeepVariant liftover, but unsuccessfully (I was not sure if its possible this way). We have thousands of samples, so we do not want to spend the resources by calculating VAF from AD, if VAF is already present in the gVCF.
Thanks!
We need to have a VAF field present from DeepVariant in a pVCF generated by GLnexus. Is it possible to adjust .yaml file to also include the original VAF field into the pVCF ?
Thanks!