Open Axze-rgb opened 3 years ago
The keep/filter decision is simpler, described in the Configuration docs (see min_AQ1 and min_AQ2, and a few of the other misc settings)
Given a called variant, the logic to revise the called zygosity (0/1 or 1/1) and GQ is a little bit more involved, but shouldn't be too hard to follow in the code
HTH
Hello,
is it possible to have some infos on the underlying model which decides to keep or reject a variant? If I understood well it's a Bayesian model, right? I would be interested to see the formula and its priors. It's pure curiosity.
Thanks a lot