dnanexus-rnd / GLnexus

Scalable gVCF merging and joint variant calling for population sequencing projects
Apache License 2.0
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Test failures on ARM #268

Open jdidion opened 3 years ago

jdidion commented 3 years ago

I am trying to get GLnexus working on AWS Graviton2. Attached is a Dockerfile that works, except that there are some unit test failures. The ctest log is also attached. Hopefully these are easy fixes.

I build this image on a t4g.large with the Amazon Linux AMI. It may be necessary to adjust -j4 to a smaller number of jobs if you get out-of-memory errors. Also, it seems that docker build doesn't fail when there are ctest errors, so I had to build the image first, then run it interactively to run the tests.

Dockerfile.txt ctest.log