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dnanexus-rnd / GLnexus

Scalable gVCF merging and joint variant calling for population sequencing projects
Apache License 2.0
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The configuration presents for DeepVariant whole genome sequencing #289

Open xunzhizhang opened 1 year ago

xunzhizhang commented 1 year ago

Hello, There are two choices in the configuration presents, "DeepVariant" and "DeepVariantWGS", for glnexus_cli (v1.4.1). They have the same description "Joint call DeepVariant whole genome sequencing gVCFs". I wonder if they are the same. Do the presets work for different sequencing data, like NGS (Illumina) data and PacBio data, since both of them can be treated with DeepVariant?

Thank you very much!

Axze-rgb commented 1 year ago

There is a "model type" option that is "WGS" when you run DeepVariant