dnanexus-rnd / GLnexus

Scalable gVCF merging and joint variant calling for population sequencing projects
Apache License 2.0
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Is capnp-test failure a cause of worry? #290

Open Axze-rgb opened 1 year ago

Axze-rgb commented 1 year ago

Hello,

I am trying to install GLnexus, and I have this error. Note that the compilation doesn't stop. Is it a benign error?

Thank you

EDIT: here is the complete failure

Testsuite summary for Capn Proto 0.7.0

TOTAL: 3

PASS: 2

SKIP: 0

XFAIL: 0

FAIL: 1

XPASS: 0

ERROR: 0

============================================================================ See ./test-suite.log Please report to capnproto@googlegroups.com

Makefile:3474: recipe for target 'test-suite.log' failed make[6]: [test-suite.log] Error 1 make[5]: [check-TESTS] Error 2 Makefile:3580: recipe for target 'check-TESTS' failed make[4]: [check-am] Error 2 Makefile:3804: recipe for target 'check-am' failed Makefile:3807: recipe for target 'check' failed make[3]: [check] Error 2 CMakeFiles/capnp.dir/build.make:111: recipe for target 'external/src/capnp-stamp/capnp-build' failed make[2]: [external/src/capnp-stamp/capnp-build] Error 2 make[1]: [CMakeFiles/capnp.dir/all] Error 2 make[1]: * Waiting for unfinished jobs.... CMakeFiles/Makefile2:515: recipe for target 'CMakeFiles/capnp.dir/all' failed -- rocksdb build command succeeded. See also /GLnexus/external/src/rocksdb-stamp/rocksdb-build-.log [ 61%] No install step for 'rocksdb' [ 62%] Completed 'rocksdb' [ 62%] Built target rocksdb Makefile:140: recipe for target 'all' failed make: [all] Error 2 The command '/bin/sh -c cmake -DCMAKE_BUILD_TYPE=$build_type . && make -j4' returned a non-zero code: 2