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I am interested in individual-level WGS vcf files in "/mnt/project/Bulk/DRAGEN WGS/Whole genome variant call files (VCFs) (DRAGEN) [500k release]" for a list of participants in eid.txt.
eid.txt
I want to locate these vcf files so I done as below but I get error
usr@LV19Y7325V dnanexus-upload-agent-1.5.33-osx %
for i in `cat eid.txt`; do dx find data --property eid=$i --folder "/mnt/project/Bulk/DRAGEN WGS/Whole genome variant call files (VCFs) (DRAGEN) [500k release]" ; done
cat: eid.txt: No such file or directory
Or, I tried this
usr@LV19Y7325V ~ % dx ls './*.gz*'
dxpy.utils.resolver.ResolutionError: Unable to resolve "*.gz*" to a data object or folder name in '/Bulk/DRAGEN WGS/Whole genome variant call files (VCFs) (DRAGEN) [500k release]'
Hi
I am interested in
individual-level WGS
vcf files in"/mnt/project/Bulk/DRAGEN WGS/Whole genome variant call files (VCFs) (DRAGEN) [500k release]"
for a list of participants ineid.txt
. eid.txtI want to locate these vcf files so I done as below but I get error
I tried this command and got error too
Or, I tried this
Please could somebody help me with this?