SCIPROD-1894: [GENOMOD] update `dxpy` `extract_assay` SQL query harmonization

dnanexus / dx-toolkit

DNAnexus platform client libraries

http://autodoc.dnanexus.com/

Apache License 2.0

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Closed csuloway-dnanexus closed 6 months ago

csuloway-dnanexus commented 6 months ago

Updates to support dx extract_assay germline --retrieve-genotype

Exclude genotype and allele table query query when alternate genotypes types are not requested
Include DISTINCT option if originally included after harmonization