SCIPROD-2016: [GENOMOD] `dx extract_assay germline --retrieve-genotype` inference use alleles to determine loci

dnanexus / dx-toolkit

DNAnexus platform client libraries

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SCIPROD-2016: [GENOMOD] `dx extract_assay germline --retrieve-genotype` inference use alleles to determine loci #1355

Closed csuloway-dnanexus closed 5 months ago

csuloway-dnanexus commented 5 months ago

Updated genotype inference in dx extract_assay germline --retrieve-genotype to use loci from the allele table to determine missing samples to infer excluded genotype types.