Closed 23andme-jaredo closed 2 years ago
Hi there,
I am having trouble getting a global docker image working via my extras.json:
{ "defaultRuntimeAttributes" : { "docker" : "dx://ukbb_wgs_test1:/docker_images/wgs_phaser.tar.gz" } }
I then compile with:
java -jar ~/software/dxCompiler-2.10.4.jar compile phase_wgs_noruntime.wdl -project ukbb_wgs_test1 -folder /workflows/test/ -f -extras extras.json
but get various runtime errors since it is not using the docker image.
If I add:
runtime { docker: "dx://ukbb_wgs_test1:/docker_images/wgs_phaser.tar.gz" }
to each task then it works fine so the docker path is correct etc.
looks like:
{ "default_runtime_attributes": { "docker" : "dx://ukbb_wgs_test1:/docker_images/wgs_phaser.tar.gz" } }
works. I think the documentation here might need to be updated.
Hi there,
I am having trouble getting a global docker image working via my extras.json:
I then compile with:
but get various runtime errors since it is not using the docker image.
If I add:
to each task then it works fine so the docker path is correct etc.