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dnbaker / dashing2

Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.
MIT License
62 stars 7 forks source link

Dev8 #44

Closed dnbaker closed 2 years ago

dnbaker commented 2 years ago
  1. One-permutation is not default. For full setksetch, use --full or --full-setsketch.
    1. We find that this has equal or better accuracy and is faster.
  2. Provide an example for generating edit distance nearest neighbor graphs in linear time.