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dnbaker
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dashing2
Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.
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Reduce memory usage in --parse-by-seq
#81
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dnbaker
closed
1 year ago
dnbaker
commented
1 year ago
Spill to disk sequences if necessary downstream; otherwise, remove them from memory when not needed.
Add --seqs-in-ram option to do this in memory to trade RAM for time.
Add to documentation.