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docker-science / cookiecutter-docker-science

Cookiecutter template for data scientists working with Docker containers
https://docker-science.github.io/
Apache License 2.0
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Add python package installation directory to $PATH #99

Closed takahi-i closed 4 years ago

takahi-i commented 4 years ago

I got the following warning in building an docker image with make init-docker

  WARNING: The scripts f2py, f2py3 and f2py3.6 are installed in '/home/docker/.local/bin' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts jupyter, jupyter-migrate and jupyter-troubleshoot are installed in '/home/docker/.local/bin' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The script jsonschema is installed in '/home/docker/.local/bin' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The script jupyter-trust is installed in '/home/docker/.local/bin' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The script pygmentize is installed in '/home/docker/.local/bin' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts iptest, iptest3, ipython and ipython3 are installed in '/home/docker/.local/bin' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts jupyter-kernel, jupyter-kernelspec and jupyter-run are installed in '/home/docker/.local/bin' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The script jupyter-nbconvert is installed in '/home/docker/.local/bin' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts jupyter-bundlerextension, jupyter-nbextension, jupyter-notebook and jupyter-serverextension are installed in '/home/docker/.local/bin' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The script jupyter-console is installed in '/home/docker/.local/bin' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The script chardetect is installed in '/home/docker/.local/bin' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.

I failed to run make jupyter in the docker container. The problem is fixed adding the path to envrionment variable $PATH as the warning describes.

export PATH=$PATH:/home/docker/.local/bin

I would like to run targets without running the workaround.