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donaldlab / OSPREY3

Open Source Protein REdesign for You v3
GNU General Public License v2.0
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java error during simultaneous mutation with Kstar #168

Open biotech70 opened 3 years ago

biotech70 commented 3 years ago

Hi. I want to implement Kstar for the simultaneous mutation but I get Java heap space error, what's the reason and how resolve this? I set the script like below. Untitled

cuchaz commented 3 years ago

Try giving more memory to the JVM process. These arguments to osprey.start() will help:

https://github.com/donaldlab/OSPREY3/blob/main/src/main/python/osprey/__init__.py#L224

Especially heapSizeMiB. Honestly, no amount of memory is too much for Osprey. Give it as much memory as you can.

biotech70 commented 3 years ago

I do this but the problem has not been solved yet