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donaldlab / OSPREY3

Open Source Protein REdesign for You v3
GNU General Public License v2.0
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CLOSED: issue running osprey from source #187

Closed ONikeH closed 1 year ago

ONikeH commented 1 year ago

Python 3.8.10 (default, Nov 14 2022, 12:59:47) [GCC 9.4.0] on linux Type "help", "copyright", "credits" or "license" for more information.

import osprey osprey.start() WARNING: Using incubator modules: jdk.incubator.foreign Traceback (most recent call last): File "", line 1, in File "/home/vlad/Desktop/Test_Osprey_Che/Sucessful_Osprey_February/OSPREY3/src/main/python/osprey/init.py", line 249, in start _start_jvm_common(lambda jre_path: jvm.start(jre_path, heapSizeMiB, enableAssertions, stackSizeMiB, garbageSizeMiB, allowRemoteManagement, attachJvmDebugger)) File "/home/vlad/Desktop/Test_Osprey_Che/Sucessful_Osprey_February/OSPREY3/src/main/python/osprey/init.py", line 179, in _start_jvm_common wraps.init(c) File "/home/vlad/Desktop/Test_Osprey_Che/Sucessful_Osprey_February/OSPREY3/src/main/python/osprey/wraps.py", line 66, in init wrapStrandFlex(c) File "/home/vlad/Desktop/Test_Osprey_Che/Sucessful_Osprey_February/OSPREY3/src/main/python/osprey/wraps.py", line 111, in wrapStrandFlex jtype = jvm.getInnerClass(c.confspace.Strand, 'Flexibility') AttributeError: Java package 'edu.duke.cs.osprey' has no attribute 'confspace'

ONikeH commented 1 year ago

Fixed: run ./gradlew assemble

Closed