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dondi / GRNsight

Web app and service for modeling and visualizing gene regulatory networks.
http://dondi.github.io/GRNsight
BSD 3-Clause "New" or "Revised" License
17 stars 8 forks source link

Adjust Open File for varying network modes (GRN/PPI) #1066

Open dondi opened 1 year ago

dondi commented 1 year ago

The Open File functionality needs to support PPIs more “natively” than they do now. Specifically:

In addition, instead of having the Network Mode lock in which files can be opened, would it be possible for the open-file command itself to determine the Network Mode based on the selected file? e.g., if the user picks a GraphML file, then we switch to GRN network mode for sure. Also if opening a demo, we can switch the Network Mode automatically at that time

For .sif files, an edge label of pp indicates a PPI. Thus, “pre-reading” a .sif can also set Network Mode upon opening

ntran18 commented 3 days ago

https://github.com/user-attachments/assets/ce5bb60d-a826-4279-9349-046f8410355a

I believe PR #1085 already fix this issue. This video didn't test the excel files.