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dondi / GRNsight

Web app and service for modeling and visualizing gene regulatory networks.
http://dondi.github.io/GRNsight
BSD 3-Clause "New" or "Revised" License
17 stars 8 forks source link

Error with import function on beta #1103

Closed nchun2 closed 3 months ago

nchun2 commented 3 months ago

I was trying to import a small-scale network to be able to put a graphic of the sensitivity assay on my poster for URS, but GRNsight was giving me the following errors Screenshot (146) The following file is the excel that I was using as an input Copy of DB5_derived_sample_network_output.xlsx

kdahlquist commented 3 months ago

I think that this is a problem with Excel having hidden holdover information in the file from having edited a previous workbook. I was able to fix the file and get it to load by deleting the empty rows at the bottom of the production_rates and degradation_rates sheets.

I deleted the whole rows as opposed to just clearing the contents of the cells.

When I then loaded it into GRNsight, the graph displayed, although there was a warning that there was no value for the "penalty" in the optimization_diagnostics sheet. I also saw that the "iteration count" was 0. Was this a direct GRNmap output? If so, something strange is going on with GRNmap.

dondi commented 3 months ago

After discussion, the workbook was stated to be from a forward simulation so the missing information doesn’t indicate a problem with GRNmap