dondi / GRNsight

Web app and service for modeling and visualizing gene regulatory networks.
http://dondi.github.io/GRNsight
BSD 3-Clause "New" or "Revised" License
17 stars 8 forks source link

Task list from now to end of the Spring 2017 semester #430

Closed kdahlquist closed 7 years ago

kdahlquist commented 7 years ago

For @anuvarsh

For @yshin4 (generally in the vein of tidying up the graph layout features/bugs)

For @mihirsamdarshi

For @eileenchoe

For @ebachoura

For @NAnguiano

For @kdahlquist

For @dondi

dondi commented 7 years ago

@anuvarsh has made some progress and will have time until next Wednesday, after which she needs to focus on MCAT. The goal we have established is for her to have the functionality working with refresh. We will look into making normalization adjustments without refresh after that, for the remainder of the semester.

dondi commented 7 years ago

@mihirsamdarshi was momentarily stuck but @dondi advised him to keep his developer console open so he can see any errors that were emerging, which was what was happening in this case. Upon seeing the error, this immediate issue was fixed during the meeting and he can now proceed.

He is projected to be finished with #355 well before the next technical meeting, so @dondi asked him to proceed to #381 once #355 has been finished, pull-requested, reviewed, and merged.

dondi commented 7 years ago

@eileenchoe is on the verge of issuing a pull request for #362, which @dondi will review. She also has a general approach (similar to @ebachoura's) for handling empty files (#428).

dondi commented 7 years ago

For @ebachoura, @dondi walked through the process involved in implementing #363, ranging from the tests to how to handle the err argument passed by the third-party parseString function. @eileenchoe's existing unit tests for her SIF syntactic checker can serve as a pattern for his own unit tests.

dondi commented 7 years ago

@dondi relayed to @eileenchoe and @ebachoura that we will be entering a swarm phase to help @NAnguiano with QA-ing her 402 work. At certain milestones, @NAnguiano can ask @eileenchoe and @ebachoura to do a thorough test with all of the combinations for the zooming/bounding box/adaptive settings that she is implementing. @eileenchoe and @ebachoura can report issues and potentially offer fixes to help polish the work.

kdahlquist commented 7 years ago

Updated task list for @ebachoura and @eileenchoe to assign #364 as per @NAnguiano's request. Downgraded their other tasks in the meantime.

NAnguiano commented 7 years ago

Updated task list to add #417 to @ebachoura and @eileenchoe.

kdahlquist commented 7 years ago

@NAnguiano and @yshin4, any progress to report after today's work session?

dondi commented 7 years ago

417 has been tabled to priority 0.5 so that @eileenchoe and @ebachoura can focus on debugging the combinatorics of @NAnguiano's full feature set.

dondi commented 7 years ago

@NAnguiano expects a new pull request for her features tonight.

kdahlquist commented 7 years ago

I closed #396, #399, and #411, opening a slew of more granular issues instead. They have been all marked with a priority level and whether they are for the upcoming release. I'm not going to try and update this issue right now. So, @NAnguiano, just please apply the relevant label filter to see what needs to be fixed immediately.

kdahlquist commented 7 years ago

I'm closing this. All open tasks that need to be completed for the next release are labeled as such. Further notes will go on issue #422: checklist for release.