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dongfang91 / Generate-and-Rank-ConNorm

Generate-and-Rank Framework with Semantic Type Regularization for Biomedical Concept Normalization
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Using BioBert #2

Closed rezash1 closed 4 years ago

rezash1 commented 4 years ago

In the paper, it is mentioned that BioBERT has been used for all experiments. Can you please point me to where you are using BioBERT in the code? Thanks.

dongfang91 commented 4 years ago

Hello Reza,

We use BioBERT to initialize our BERT based multi-class classifier and BERT based listwise classifier.

E.g., we will use "biobert" for $model_name_or_path

python3.7 run_glue_custom.py \
--model_name_or_path bert-base-uncased \
....