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dongzhang0725 / PhyloSuite

PhyloSuite is an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies
GNU General Public License v3.0
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HTTP Error 400: Bad Request #16

Closed rolandfang closed 5 years ago

rolandfang commented 5 years ago

Traceback (most recent call last): File "codes\PhyloSuite.py", line 394, in run_command File "codes\PhyloSuite.py", line 277, in fetSeqFromNCBI File "site-packages\Bio\Entrez__init.py", line 184, in efetch File "site-packages\Bio\Entrez__init__.py", line 533, in _open File "site-packages\Bio\Entrez\init__.py", line 531, in _open File "urllib\request.py", line 223, in urlopen File "urllib\request.py", line 532, in open File "urllib\request.py", line 642, in http_response File "urllib\request.py", line 570, in error File "urllib\request.py", line 504, in _call_chain File "urllib\request.py", line 650, in http_error_default urllib.error.HTTPError: HTTP Error 400: Bad Request

dongzhang0725 commented 5 years ago

Hi,

This problem is probably caused by the network malfunction, please check your network (proxy, etc.). An alternative option is using Batch Entrez (https://www.ncbi.nlm.nih.gov/sites/batchentrez?) to download the GenBank file, and then upload the file into PhyloSuite (see https://dongzhang0725.github.io/dongzhang0725.github.io/PhyloSuite-demo/five_ways_to_import/).

Best, Dong