祖先性状重建 - Githubissues

35231 commented 2 years ago

老师，您好，想问一下，您这边有做祖先性状重建方面的内容吗？

dongzhang0725 commented 2 years ago

PhyloSuite目前不支持

35231 commented 2 years ago

那您这边有这方面的相关分析软件吗？

---原始邮件--- 发件人: "zhang @.> 发送时间: 2021年11月2日(周二) 上午9:54 收件人: @.>; 抄送: @.**@.>; 主题: Re: [dongzhang0725/PhyloSuite] 祖先性状重建 (Issue #37)

PhyloSuite目前不支持

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35231 commented 2 years ago

您好，这个用叶绿体全基因组建树是一样的是吗？还是操作步骤有所不同

------------------ 原始邮件 ------------------ 发件人: "dongzhang0725/PhyloSuite" @.>; 发送时间: 2021年11月2日(星期二) 上午9:54 @.>; @.**@.>; 主题: Re: [dongzhang0725/PhyloSuite] 祖先性状重建 (Issue #37)

PhyloSuite目前不支持

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dongzhang0725 commented 2 years ago

步骤类似

35231 @.***> 于2021年11月3日周三下午8:59写道：

您好，这个用叶绿体全基因组建树是一样的是吗？还是操作步骤有所不同

------------------ 原始邮件 ------------------ 发件人: "dongzhang0725/PhyloSuite" @.>; 发送时间: 2021年11月2日(星期二) 上午9:54 @.>; @.**@.>; 主题: Re: [dongzhang0725/PhyloSuite] 祖先性状重建 (Issue #37)

PhyloSuite目前不支持

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35231 commented 2 years ago

那这里面还要进行序列提取吗？提取序列的名称是写chlorophast gene 吗？

---原始邮件--- 发件人: "zhang @.> 发送时间: 2021年11月3日(周三) 晚上11:10 收件人: @.>; 抄送: @.**@.>; 主题: Re: [dongzhang0725/PhyloSuite] 祖先性状重建 (Issue #37)

步骤类似

35231 @.***> 于2021年11月3日周三下午8:59写道：

> 您好，这个用叶绿体全基因组建树是一样的是吗？还是操作步骤有所不同 > > > > > > > ------------------ 原始邮件 ------------------ > 发件人: "dongzhang0725/PhyloSuite" @.>; > 发送时间: 2021年11月2日(星期二) 上午9:54 > @.>; > @.**@.>; > 主题: Re: [dongzhang0725/PhyloSuite] 祖先性状重建 (Issue #37) > > > > > > > PhyloSuite目前不支持 > > — > You are receiving this because you authored the thread. > Reply to this email directly, view it on GitHub, or unsubscribe. > Triage notifications on the go with GitHub Mobile for iOS or Android. > > — > You are receiving this because you commented. > Reply to this email directly, view it on GitHub > <https://github.com/dongzhang0725/PhyloSuite/issues/37#issuecomment-959010964>, > or unsubscribe > <https://github.com/notifications/unsubscribe-auth/ADZXXOPMXNYWXVJDRWXR3SLUKEW4RANCNFSM5HFJT75Q> > . > Triage notifications on the go with GitHub Mobile for iOS > <https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> > or Android > <https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>. > >

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dongzhang0725 commented 2 years ago

按线粒体基因组的方式提取各个叶绿体基因，可能需要一点儿自定义，见： http://phylosuite.jushengwu.com/dongzhang0725.github.io/PhyloSuite-demo/customize_extraction/

35231 @.***> 于2021年11月4日周四下午6:51写道：

那这里面还要进行序列提取吗？提取序列的名称是写chlorophast gene 吗？

---原始邮件--- 发件人: "zhang @.> 发送时间: 2021年11月3日(周三) 晚上11:10 收件人: @.>; 抄送: @.**@.>; 主题: Re: [dongzhang0725/PhyloSuite] 祖先性状重建 (Issue #37)

步骤类似

35231 @.***> 于2021年11月3日周三下午8:59写道：

> 您好，这个用叶绿体全基因组建树是一样的是吗？还是操作步骤有所不同 > > > > > > > ------------------ 原始邮件 ------------------ > 发件人: "dongzhang0725/PhyloSuite" @.>; > 发送时间: 2021年11月2日(星期二) 上午9:54 > @.>; > @.**@.>; > 主题: Re: [dongzhang0725/PhyloSuite] 祖先性状重建 (Issue #37) > > > > > > > PhyloSuite目前不支持 > > — > You are receiving this because you authored the thread. > Reply to this email directly, view it on GitHub, or unsubscribe. > Triage notifications on the go with GitHub Mobile for iOS or Android. > > — > You are receiving this because you commented. > Reply to this email directly, view it on GitHub > < https://github.com/dongzhang0725/PhyloSuite/issues/37#issuecomment-959010964>,

> or unsubscribe > < https://github.com/notifications/unsubscribe-auth/ADZXXOPMXNYWXVJDRWXR3SLUKEW4RANCNFSM5HFJT75Q>

> . > Triage notifications on the go with GitHub Mobile for iOS > < https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675>

> or Android > < https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>.

> >

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35231 commented 2 years ago

就是我想用一整条完整的叶绿体基因组序列进行建树，这样的话是直接讲gb文件转为fasta文件，然后进行比对就可以了还是？

---原始邮件--- 发件人: "zhang @.> 发送时间: 2021年11月4日(周四) 晚上6:57 收件人: @.>; 抄送: @.**@.>; 主题: Re: [dongzhang0725/PhyloSuite] 祖先性状重建 (Issue #37)

按线粒体基因组的方式提取各个叶绿体基因，可能需要一点儿自定义，见： http://phylosuite.jushengwu.com/dongzhang0725.github.io/PhyloSuite-demo/customize_extraction/

35231 @.***> 于2021年11月4日周四下午6:51写道：

> 那这里面还要进行序列提取吗？提取序列的名称是写chlorophast gene 吗？ > > > > ---原始邮件--- > 发件人: "zhang @.> > 发送时间: 2021年11月3日(周三) 晚上11:10 > 收件人: @.>; > 抄送: @.**@.>; > 主题: Re: [dongzhang0725/PhyloSuite] 祖先性状重建 (Issue #37) > > > > > 步骤类似 > > 35231 @.> 于2021年11月3日周三下午8:59写道： > > > 您好，这个用叶绿体全基因组建树是一样的是吗？还是操作步骤有所不同 > > > > > > > > > > > > > > ------------------&nbsp;原始邮件&nbsp;------------------ > > 发件人: "dongzhang0725/PhyloSuite" @.&gt;; > > 发送时间:&nbsp;2021年11月2日(星期二) 上午9:54 > > @.&gt;; > > @*.**@*.***&gt;; > > 主题:&nbsp;Re: [dongzhang0725/PhyloSuite] 祖先性状重建 (Issue #37) > > > > > > > > > > > > > > PhyloSuite目前不支持 > > > > — > > You are receiving this because you authored the thread. > > Reply to this email directly, view it on GitHub, or unsubscribe. > > Triage notifications on the go with GitHub Mobile for iOS or Android. > > > > — > > You are receiving this because you commented. > > Reply to this email directly, view it on GitHub > > < > https://github.com/dongzhang0725/PhyloSuite/issues/37#issuecomment-959010964&gt;, > > > or unsubscribe > > < > https://github.com/notifications/unsubscribe-auth/ADZXXOPMXNYWXVJDRWXR3SLUKEW4RANCNFSM5HFJT75Q&gt; > > > . > > Triage notifications on the go with GitHub Mobile for iOS > > < > https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&amp;mt=8&amp;pt=524675&gt; > > > or Android > > < > https://play.google.com/store/apps/details?id=com.github.android&amp;referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub&gt;. > > > > > > > — > You are receiving this because you authored the thread. > Reply to this email directly, view it on GitHub, or unsubscribe. > Triage notifications on the go with GitHub Mobile for iOS or Android. > > — > You are receiving this because you commented. > Reply to this email directly, view it on GitHub > <https://github.com/dongzhang0725/PhyloSuite/issues/37#issuecomment-960644115>, > or unsubscribe > <https://github.com/notifications/unsubscribe-auth/ADZXXOIYCHCFUB7OSB4K2KTUKJQRJANCNFSM5HFJT75Q> > . > Triage notifications on the go with GitHub Mobile for iOS > <https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> > or Android > <https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>. > >

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35231 commented 2 years ago

您好，打扰您一下，想问一下，比对序列进行修剪出现下面这个问题是什么原因呢？谢谢

---原始邮件--- 发件人: "zhang @.> 发送时间: 2021年11月4日(周四) 晚上6:57 收件人: @.>; 抄送: @.**@.>; 主题: Re: [dongzhang0725/PhyloSuite] 祖先性状重建 (Issue #37)

按线粒体基因组的方式提取各个叶绿体基因，可能需要一点儿自定义，见： http://phylosuite.jushengwu.com/dongzhang0725.github.io/PhyloSuite-demo/customize_extraction/

35231 @.***> 于2021年11月4日周四下午6:51写道：

> 那这里面还要进行序列提取吗？提取序列的名称是写chlorophast gene 吗？ > > > > ---原始邮件--- > 发件人: "zhang @.> > 发送时间: 2021年11月3日(周三) 晚上11:10 > 收件人: @.>; > 抄送: @.**@.>; > 主题: Re: [dongzhang0725/PhyloSuite] 祖先性状重建 (Issue #37) > > > > > 步骤类似 > > 35231 @.> 于2021年11月3日周三下午8:59写道： > > > 您好，这个用叶绿体全基因组建树是一样的是吗？还是操作步骤有所不同 > > > > > > > > > > > > > > ------------------&nbsp;原始邮件&nbsp;------------------ > > 发件人: "dongzhang0725/PhyloSuite" @.&gt;; > > 发送时间:&nbsp;2021年11月2日(星期二) 上午9:54 > > @.&gt;; > > @*.**@*.***&gt;; > > 主题:&nbsp;Re: [dongzhang0725/PhyloSuite] 祖先性状重建 (Issue #37) > > > > > > > > > > > > > > PhyloSuite目前不支持 > > > > — > > You are receiving this because you authored the thread. > > Reply to this email directly, view it on GitHub, or unsubscribe. > > Triage notifications on the go with GitHub Mobile for iOS or Android. > > > > — > > You are receiving this because you commented. > > Reply to this email directly, view it on GitHub > > < > https://github.com/dongzhang0725/PhyloSuite/issues/37#issuecomment-959010964&gt;, > > > or unsubscribe > > < > https://github.com/notifications/unsubscribe-auth/ADZXXOPMXNYWXVJDRWXR3SLUKEW4RANCNFSM5HFJT75Q&gt; > > > . > > Triage notifications on the go with GitHub Mobile for iOS > > < > https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&amp;mt=8&amp;pt=524675&gt; > > > or Android > > < > https://play.google.com/store/apps/details?id=com.github.android&amp;referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub&gt;. > > > > > > > — > You are receiving this because you authored the thread. > Reply to this email directly, view it on GitHub, or unsubscribe. > Triage notifications on the go with GitHub Mobile for iOS or Android. > > — > You are receiving this because you commented. > Reply to this email directly, view it on GitHub > <https://github.com/dongzhang0725/PhyloSuite/issues/37#issuecomment-960644115>, > or unsubscribe > <https://github.com/notifications/unsubscribe-auth/ADZXXOIYCHCFUB7OSB4K2KTUKJQRJANCNFSM5HFJT75Q> > . > Triage notifications on the go with GitHub Mobile for iOS > <https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> > or Android > <https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>. > >

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dongzhang0725 commented 2 years ago

我这里看不到相关问题的截图

dongzhang0725 / PhyloSuite

祖先性状重建 #37