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dongzhang0725 / PhyloSuite

PhyloSuite is an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies
GNU General Public License v3.0
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MrBayes stopped abnormally #39

Closed Daitargao closed 2 years ago

Daitargao commented 2 years ago

When I try to use de Mrbayes tree with my model, this error appears: "C:\Users\daiab\AppData\Roaming\PhyloSuite\plugins\MrBayes/mrbayes_x64.exe") Best regards

dongzhang0725 commented 2 years ago

Try this resolution: http://phylosuite.jushengwu.com/dongzhang0725.github.io/documentation/#7-3-MrBayes-does-not-work

Daitargao commented 2 years ago

Thank you Dongzhang. after I did this resolution for MrBayes I tried to do an Iqtree for another model, and a I had a problem like this: For your convenience alignment with unique sequences printed to C:/Users/daiab/OneDrive/Documentos/MESTRADO/Disciplinas/AGRO7044_DETECAOOMOLECULAR/Trabalhofinal/Phylosuite\GenBank_File/files\IQtree_results\2021_11_11-22_09_12\TF1_Maf_mega_corrigido.fas.uniqueseq.phy Reading input tree file MH867575 ...terminate called after throwing an instance of 'std::ios_base::failure' what(): basic_ios::clear ERROR: ERROR: IQ-TREE CRASHES WITH SIGNAL ABORTED ERROR: For bug report please send to developers: ERROR: Log file: C:/Users/daiab/OneDrive/Documentos/MESTRADO/Disciplinas/AGRO7044_DETECAOOMOLECULAR/Trabalhofinal/Phylosuite\GenBank_File/files\IQtree_results\2021_11_11-22_09_12\TF1_Maf_mega_corrigido.fas.log ERROR: Alignment files (if possible)

But it is the same sequence as I used for Mrbayes but with another model (only for Iqtree). Can you help me?

dongzhang0725 commented 2 years ago

It is hard to find out what happened to IQ-TREE analysis via this error message, if you don't mind, send your input file to me to debug.

Daitargao commented 2 years ago

Hi, thank you for answering me, sure I will send my sequence, I am working on a public sequence from an article. And it is important to Know that the IB works well after your help, and the IQtree when I did online works fine too, it is only when I Use phylosuite that didn´t work. Best regards

Daiane

Daitargao commented 2 years ago

Hi Dong Hang,

Here is the sequence after did the alignment with mafft online, and I Used the Mega system for cute and organize the bases. We are working in a University practice then we used the sequence from this article for the gene TEF1 ( we are using only thisgene): Large-spored Alternaria pathogens in section Porri disentangled. DOI: http://dx.doi.org/10.1016/j.simyco.2014.07.003.

best regards and I am available if you need more information.

Daiane

Em sáb., 13 de nov. de 2021 às 09:03, zhang dong @.***> escreveu:

It is hard to find out what happened to IQ-TREE analysis via this error message, if you don't mind, send your input file to me to debug.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/dongzhang0725/PhyloSuite/issues/39#issuecomment-968057627, or unsubscribe https://github.com/notifications/unsubscribe-auth/AWNLJRVMHCGU4EMFO4Z3XZTULZH2VANCNFSM5HWVDGBA . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.

-- Daiane Porto Targão Engenheira Agrônoma - Especialista em Gestão da Mudança Telefone: 17 - 98156-3894

dongzhang0725 commented 2 years ago

Hi, Daiane, I didn't find an alignment file, can you send the alignment as an attachment?