PhyloSuite is an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies
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macse: missing required options: align, optim #50
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nzx9581 closed 2 years ago
张老师您好:
我在mafft多序列比对完成后按照教程进入macse进行结果优化,但是一直出现下列报错:
log文件显示如下
gatB_mafft.fas --- Please check your command line: Missing required options: align, optim
gatB_mafft.fas --- usage: java -jar -Xmx600m testJar_macse.jar -prog refineAlignment -align <NT_alignment.fasta> [-ext_gap_ratio <.95>] [-fs <30>] [-fs_lr <10>]
于是我把命令拿出来单独在终端里运行还是不行,同时加上-align和-optim也还是同样的报错,请问老师这是什么原因导致的呢?macse是用conda装的,phylosuite里macse的路径也是正确的,系统版本是Debian 9感谢您的耐心解答!