Closed z-pyyyy closed 1 year ago
总而言之就是自己安装mrbayes,然后在phylosuite里面指定mrbayes就能用了。不管你用什么方法安装mrbayes都行,brew install只是其中一种
z-pyyyy @.***> 于2023年3月22日周三 23:20写道:
老师您好,我是mac m1的系统 在输入命令/Users/yunceng/Desktop/PhyloSuite/plugins/MrBayes/mb后,终端显示 dyld[2333]: Library not loaded: /usr/local/lib/libhmsbeagle.1.dylib Referenced from: <835CE863-3DD5-3071-9429-7AAF32746287> /Users/yunceng/Desktop/PhyloSuite/plugins/MrBayes/mb Reason: tried: '/usr/local/lib/libhmsbeagle.1.dylib' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/usr/local/lib/libhmsbeagle.1.dylib' (no such file), '/usr/local/lib/libhmsbeagle.1.dylib' (no such file), '/usr/lib/libhmsbeagle.1.dylib' (no such file, not in dyld cache) zsh: abort /Users/yunceng/Desktop/PhyloSuite/plugins/MrBayes/mb
此处与视频中一致,但本人知识实在浅陋,对于视频中后续的操作并没有完全理解,是指继续输入"brew tap brewsci/bio brew install mrbayes"的命令嘛,又或是其他的什么操作呢? 请老师指教 十分抱歉打扰您
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感谢您的帮助!我已经下载完成了,但是在后续操作构建bi树后,我想要打开.tre文件,phylosuite却显示"NCBI taxonomy database is not downloaded, which may affect several functions. Do you wishok to install now?"
另:在使用itol进行系统发育树美化时,我依据视频将extract-itolfile文件夹中的文件拖拽进入itol网页后,itol显示解析时检测不到id 以下为截屏
抱歉再次打扰到您,由于我在视频中并没有找到相关的解决办法,无奈只能再次向您求助
查看树的话,建议先用itol等外部工具,见我们近期发表的protocol。内置的系统发育树查看工具还没有完善
z-pyyyy @.***> 于2023年3月23日周四 13:26写道:
感谢您的帮助!我已经下载完成了,但是在后续操作构建bi树后,我想要打开.tre文件,phylosuite却显示"NCBI taxonomy database is not downloaded, which may affect several functions. Do you wishok to install now?"
- 选择ignore,弹出树文件
- 选择ok 2.1 我依照提示点击[https://ftp.ncbi.nih.gov/pub/taxonomy]( https://ftp.ncbi.nih.gov/pub/taxonomy/taxdump.tar.gz)下载后却始终无法成功上传已下载的文件; 2.2 又或是我直接点击download database file区域中的download进行下载,phylosuite则会直接闪退 以下为截屏
[image: 截屏2023-03-23 13 17 09] https://user-images.githubusercontent.com/125143689/227110142-d8375058-b793-4ebf-8100-d54f5a2ace59.png
[image: 截屏2023-03-23 13 17 28] https://user-images.githubusercontent.com/125143689/227110183-5b9ce4f6-3f54-4d5f-97b2-30a8241b1bb4.png
另:在使用itol进行系统发育树美化时,我依据视频将extract-itolfile文件夹中的文件拖拽进入itol网页后,itol显示解析时检测不到id 以下为截屏 [image: 截屏2023-03-23 13 24 24] https://user-images.githubusercontent.com/125143689/227111358-9b259ddf-7781-4534-bad1-9401b9db9c75.png
抱歉再次打扰到您,由于我在视频中并没有找到相关的解决办法,无奈只能再次向您求助
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好的,麻烦您了!谢谢
老师您好,我是mac m1的系统 在输入命令/Users/yunceng/Desktop/PhyloSuite/plugins/MrBayes/mb后,终端显示 dyld[2333]: Library not loaded: /usr/local/lib/libhmsbeagle.1.dylib Referenced from: <835CE863-3DD5-3071-9429-7AAF32746287> /Users/yunceng/Desktop/PhyloSuite/plugins/MrBayes/mb Reason: tried: '/usr/local/lib/libhmsbeagle.1.dylib' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/usr/local/lib/libhmsbeagle.1.dylib' (no such file), '/usr/local/lib/libhmsbeagle.1.dylib' (no such file), '/usr/lib/libhmsbeagle.1.dylib' (no such file, not in dyld cache) zsh: abort /Users/yunceng/Desktop/PhyloSuite/plugins/MrBayes/mb
此处与视频中一致,但本人知识实在浅陋,对于视频中后续的操作并没有完全理解,是指继续输入"brew tap brewsci/bio brew install mrbayes"的命令嘛,又或是其他的什么操作呢? 请老师指教 十分抱歉打扰您