dongzhang0725 / PhyloSuite

PhyloSuite is an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies
GNU General Public License v3.0
140 stars 24 forks source link

Taxon name Issues #69

Open CXna1108 opened 1 year ago

CXna1108 commented 1 year ago

老师,又来打扰您啦。就是我在跑树的时候出现了以下报错: Taxon name AB614504_1_Phyllocnistis_gracilistylella_mitochondrial_COI_gene_for_cytochrome_oxidase_subunit_Ipartial_cdscountryJapan_NaganoNagano__Sai_gawa is too long. Maximun 99 characters is allowed. 由于我的序列较多,许多Taxon name的字符也很长,因此,我想问问老师有没有什么办法可以批量的将‘Taxon name'批量更改为只保留序列的序列号/登录号,而序列号/登录号后面的描述删除呢?

也给出了相对应的解决方案: 1.Deleting previously defined characters 2.Deleting previously defined taxa 还有以下的提示 Returning execution to command line... Error in command "Execute" Will exit with signal 1 (error) because quitonerror is set to yes If you want control to be returned to the command line on error, use 'mb -i ' (i is for interactive) or use 'set quitonerror=no' 所以我想请教一下,我在PhyloSuite工作界面中哪里可以设置 'set quitonerror=no。

dongzhang0725 commented 1 year ago

提取的时候可以设置用什么作为序列名,比如说ID或者拉丁名

CXna1108 @.***> 于2023年5月7日周日 10:22写道:

老师,又来打扰您啦。就是我在跑树的时候出现了以下报错: Taxon name AB614504_1_Phyllocnistis_gracilistylella_mitochondrial_COI_gene_for_cytochrome_oxidase_subunit_Ipartial_cdscountryJapan_NaganoNagano__Sai_gawa is too long. Maximun 99 characters is allowed. 由于我的序列较多,许多Taxon name的字符也很长,因此,我想问问老师有没有什么办法可以批量的将‘Taxon name'批量更改为只保留序列的序列号/登录号,而序列号/登录号后面的描述删除呢?

也给出了相对应的解决方案: 1.Deleting previously defined characters 2.Deleting previously defined taxa 还有以下的提示 Returning execution to command line... Error in command "Execute" Will exit with signal 1 (error) because quitonerror is set to yes If you want control to be returned to the command line on error, use 'mb -i ' (i is for interactive) or use 'set quitonerror=no' 所以我想请教一下,我在PhyloSuite工作界面中哪里可以设置 'set quitonerror=no。

— Reply to this email directly, view it on GitHub https://github.com/dongzhang0725/PhyloSuite/issues/69, or unsubscribe https://github.com/notifications/unsubscribe-auth/ADZXXOM3CY4DA23KI4DRZ33XE4BNXANCNFSM6AAAAAAXYQXVAE . You are receiving this because you are subscribed to this thread.Message ID: @.***>

CXna1108 commented 1 year ago

好的,那我提取序列的时候怎么知道自己的序列属于那一套密码表呢? 我的序列是昆虫的COI序列。

dongzhang0725 commented 1 year ago

前阵子发表的那个protocol里面有介绍这个技巧

Chenxiaona @.***> 于2023年5月7日周日 16:58写道:

好的,那我提取序列的时候怎么知道自己的序列属于那一套密码表呢? 我的序列是昆虫的COI序列。

— Reply to this email directly, view it on GitHub https://github.com/dongzhang0725/PhyloSuite/issues/69#issuecomment-1537362933, or unsubscribe https://github.com/notifications/unsubscribe-auth/ADZXXOL4MSGMB6ESJ2JVVL3XE5P3RANCNFSM6AAAAAAXYQXVAE . You are receiving this because you commented.Message ID: @.***>

CXna1108 commented 1 year ago

好的