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dongzhang0725 / PhyloSuite

PhyloSuite is an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies
GNU General Public License v3.0
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Model invalid! #92

Open lijie9654 opened 3 months ago

lijie9654 commented 3 months ago

ModelFinder v2.2.0 (Kalyaanamoorthy et al., 2017) was used to select the best-fit model using BIC criterion. Best-fit model according to BIC: Q.pfam+R5.然后建树时没有这个模型，请问怎么解决，谢谢老师。

dongzhang0725 commented 3 months ago

这是因为IQTREE新加了模型，老版本phylosuite没有，有2种方案解决：

  1. 加群 793392807，里面有新版phylosuite，可以支持这些模板；
  2. 可以用IQTREE的自定义模型解决

lijie9654 @.***> 于2024年4月6日周六 21:38写道：

ModelFinder v2.2.0 (Kalyaanamoorthy et al., 2017) was used to select the best-fit model using BIC criterion. Best-fit model according to BIC: Q.pfam+R5.然后建树时没有这个模型，请问怎么解决，谢谢老师。

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lijie9654 commented 3 months ago

好的，谢谢老师。这个自定义模型和ModelFinder最佳模型最后建树结果差异大吗？

dongzhang0725 commented 3 months ago

准确来说应该是以自定义命令形式运行，就是在自动生成的命令基础上，换成你的最佳模型去跑

lijie9654 @.***> 于2024年4月7日周日 09:30写道：

好的，谢谢老师。这个自定义模型和ModelFinder最佳模型最后建树结果差异大吗？

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lijie9654 commented 3 months ago

好的，谢谢老师。