donia-lab / MetaBGC

A metagenomic strategy for harnessing the chemical repertoire of the human microbiome
GNU General Public License v3.0
32 stars 8 forks source link

Ensure biopython version is less than 1.78 which removes alphabet #14

Closed andre-geldenhuis closed 4 years ago

andre-geldenhuis commented 4 years ago

The latest biopython (1.78) removes alphabet which is used in createsphmms.py

As a quickfix I restricted the biopython version to less than 1.78

See https://biopython.org/wiki/Alphabet for info on the removal.