search

donovan-h-parks / CompareM

A toolbox for comparative genomics.
GNU General Public License v3.0
96 stars 19 forks source link

No genomes found in directory #20

Closed LinXuZJU closed 4 years ago

LinXuZJU commented 5 years ago

I was running comparem to calculate AAI value between two genomes. And I have loaded two genome in the directory "Genome". But it cannot find genomes in this directory. So how can I solve this problem?

[2018-12-21 20:33:06] INFO: CompareM v0.0.23 [2018-12-21 20:33:06] INFO: comparem aai_wf Genome/ AAI/ [2018-12-21 20:33:06] WARNING: No genomes found in directory: Genome/. Check the --file_ext flag used to identify genomes.

Could someone can help me?

donovan-h-parks commented 5 years ago

Hello. Can you confirm that your genomes have the expected extension? If not, you can set the extension of the files to process with the --file_ext flag.

LinXuZJU commented 5 years ago

Hello. Can you confirm that your genomes have the expected extension? If not, you can set the extension of the files to process with the --file_ext flag.

Thanks. It worked now, but the orthologous gene numbers were zero in the result. How can I solve this problem?