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donovan-h-parks / CompareM

A toolbox for comparative genomics.
GNU General Public License v3.0
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Non reciprocal AAI #37

Open drs opened 3 years ago

drs commented 3 years ago

Hello,

Is it possible to use compareM to compute non-reciprocal AAI (different query and target genes). I ran it using the following command : 

nice -19 comparem aai -c 36 query_genes.faa hits_sorted.tsv 1v2-AAI

But all AAI values were 0 (with 0 ortholog genes for all genomes).