PhyloRank can't calculate RED

donovan-h-parks / PhyloRank

Assign taxonomic ranks based on evolutionary divergence.

GNU General Public License v3.0

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PhyloRank can't calculate RED #21

Open helloacc opened 1 year ago

helloacc commented 1 year ago

When I calculate the RED values , PhyloRank can't recognize taxa information. Even though I used the example_data, I still got an error.
But when I use the decoration function, there is no problem.

donovan-h-parks commented 1 year ago

Hi,

PhyloRank calculates RED by rooting a tree on each phyla with at least 2 classes. It is a requirement that your tree have at least 2 such phyla. In general, PhyloRank is meant to be run on a domain wide tree where there are multiple phyla meeting this requirement.

Cheers, Donovan