donovan-h-parks RefineM issues

donovan-h-parks / RefineM

A toolbox for improving metagenome-assembled genomes.

GNU General Public License v3.0

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issues

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PearsonRConstantInputWarning: An input array is constant; the correlation coefficient is not defined.

#58 B-1991-ing closed 2 years ago
2
ssu_erroneous issue

#57 Bowenji147 opened 3 years ago
1
r95 database files for refinem donot contain 16S files?

#56 Jigyasa3 opened 3 years ago
3
RefineM database update

#55 uzunmasha opened 3 years ago
1
KeyError in taxon_profile

#54 estebangongora opened 3 years ago
2
TypeError: can only join an iterable

#53 angelovaag opened 3 years ago
0
Inconsistent Nomenclatures of the organisms in r95 and r80 databases

#52 DOieGYuan opened 3 years ago
1
format of coverage_file

#51 slaperriere closed 3 years ago
0
Pre-built diamond database is incompatible with newer versions of diamond

#50 papanikos closed 3 years ago
2
Incompatible versions of biolib.taxonomy and refinem.taxon_profile with conda installation

#49 papanikos closed 3 years ago
6
refinem taxon_profile went wrong

#48 xu-j1234566 closed 4 years ago
1
ssu_erroneous issue

#47 arghya1611 closed 4 years ago
7
RefineM database download url is broken

#46 taylorreiter closed 4 years ago
1
Py3 port

#45 donovan-h-parks closed 4 years ago
0
check if bin id match before remove scaffolds from a bin

#44 lijierr opened 4 years ago
0
Error with refine taxon_profile

#43 arghya1611 closed 4 years ago
2
GTDB r89 protein database

#42 uzunmasha closed 4 years ago
5
Can we use refined and unrefined bins from a sample together?

#41 Jigyasa3 opened 4 years ago
2
warning in taxon_profile

#40 Xiaolan89 opened 4 years ago
0
Wrong scaffold coverage calculation when using coverage file

#39 adityabandla opened 4 years ago
5
installation issue

#38 Xiaolan89 opened 4 years ago
2
use coverage profile instead of bam files

#37 liupfskygre closed 5 years ago
5
error in filtering?

#36 raw937 opened 5 years ago
0
Installation issues

#35 nixon444 opened 5 years ago
18
setup.py: Add pysam as a dependency.

#34 wwood opened 5 years ago
0
error during refinem taxon_profile

#33 chloelulu opened 5 years ago
0
taxon_filter

#32 uzunmasha opened 5 years ago
0
RefineM split command

#31 CynthiaChibani closed 3 years ago
0
Databases

#30 HadrienG closed 5 years ago
9
Memory problems

#29 joao1980 opened 5 years ago
0
refinem ssu_erroneous error

#28 zhaohuicheng opened 6 years ago
2
How to use RefineM to Improve completeness

#27 nohayoussef opened 6 years ago
1
outliers run error

#26 gaohanlisa opened 6 years ago
5
diamond fails on new version

#25 ghost opened 6 years ago
0
can refineM be used public?

#24 chloelulu closed 6 years ago
1
problem with taxon profile

#23 rotoscan closed 6 years ago
1
Error: BAM index file is missing, while it is actually present

#22 Stefano04 closed 6 years ago
2
refinem outliers error during plot

#21 michoug opened 6 years ago
1
refinem ssu_erroneous error

#20 michoug closed 6 years ago
12
--cov_corr value

#19 palomo11 opened 6 years ago
1
Error ktImportText missing

#18 palomo11 closed 6 years ago
4
Zero coverage for all samples

#17 cedwardson4 opened 6 years ago
14
FloatingPointError: underflow encountered in double_scalars

#16 SagesWang closed 6 years ago
4
Questions about Removing contamination based on taxonomic assignments

#15 Feverdreams closed 6 years ago
3
DIAMOND version

#14 evensannesriiser closed 6 years ago
4
Outliers: Ignore "cov_perc" parameter

#13 evensannesriiser closed 6 years ago
3
problem with taxon_profile databases

#12 zyyalice closed 6 years ago
6
refinem outliers error

#11 dot4822 closed 6 years ago
14
Problem with taxon_profile

#10 kramersu closed 6 years ago
3
Add in option to show PE read links between contigs

#9 donovan-h-parks opened 7 years ago
0