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donovan-h-parks / STAMP

Statistical Analysis of Metagenomic Profiles
GNU General Public License v3.0
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PCA method: #25

Closed EisenRa closed 4 years ago

EisenRa commented 6 years ago

Dear authors,

Thank you for writing this software -- it is brilliant!

I have a quick question regarding the PCA analysis: how is the data ordinated? Bray-Curtis?

Kind regards, Raphael

donovan-h-parks commented 6 years ago

Just Euclidean.

On Dec 5, 2017 7:58 PM, "EisenRa" notifications@github.com wrote:

Dear authors,

Thank you for writing this software -- it is brilliant!

I have a quick question regarding the PCA analysis: how is the data ordinated? Bray-Curtis?

Kind regards, Raphael

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EisenRa commented 6 years ago

Thanks! Presumably, pseudocounts are added to null values?

donovan-h-parks commented 6 years ago

You can set the psedocount in one of STAMP's dialog boxes.

On Tue, Dec 5, 2017 at 8:02 PM, EisenRa notifications@github.com wrote:

Thanks! Presumably, pseudocounts are added to null values?

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