How to start STAMP from command line

[emankhalaf]

Hello, I am a beginner in using STAMP. I am using Ubuntu 16.04. I created an environment and installed stamp using the following code: conda install -c bioconda stamp

I have my file generated from Tax4Fun comparing reads/values of metabolic pathways in a control sample vs pathogen-treated sample. I don't know how to use stamp from the command line.

I have a previous trial where I installed the software quickly on my pc, but the test file did not work that makes me uncertain about using it based on the installation instructions.

All what I need is a good tutorial for using STAMP from command line

Thanks Eman

[emankhalaf]

I run: STAMP and got this error:

Traceback (most recent call last): File "/home/eman/anaconda3/envs/stamp/bin/STAMP", line 32, in from stamp import STAMP File "/home/eman/anaconda3/envs/stamp/lib/python2.7/site-packages/stamp/STAMP.py", line 38, in from stamp.GUI.plotDlg import PlotDlg # forward reference so py2app recognizes this file is required File "/home/eman/anaconda3/envs/stamp/lib/python2.7/site-packages/stamp/GUI/plotDlg.py", line 24, in from PyQt4 import QtGui, QtCore ImportError: No module named PyQt4

Actually, I have pyqt5 in the plugin folder. Does it mean I need to download pyqt4? Please help

[emankhalaf]

solved. Thanks

[GuillaumeSwB]

Hi,

Could you please tell me how did you solve it ?

[NainaK6]

Hi, could anyone please let me know, how can I run STAMP from the command line in a Linux cluster?

[limrp]

Hi, could anyone please let me know, how can I run STAMP from the command line in a Linux cluster?

I have the same question. Does anyone has a solution for this?

[emankhalaf]

just type $stamp