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dorianps / LESYMAP

Lesion to Symptom Mapping in R
https://dorianps.github.io/LESYMAP/
Apache License 2.0
33 stars 11 forks source link

Is there any way to create a nifti file? #10

Closed ziqianwang9 closed 5 years ago

ziqianwang9 commented 5 years ago

Hello developers, thank you for providing this wonderful program. And I want to use it on tumor patients. As a very beginner, I don't know if this program just supply image result or there is any way that I could get a '.nii' format file to overlay it on T1 image? Looking forward to your reply. Thanks again.

Best regards, Ziqian Wang

dorianps commented 5 years ago

You can save all the outputs automatically by adding the saveDir argument. Example:

lsm = lesymap(... , saveDir='/path/to/save/folder')

Internally, this calls save.lesymap(), which you can also call a posteriori with something like save.lesymap(lsm), where lsm is the output produced by the lesymap() function. If you specify the template, you will also get bitmaps of the overlays, while the various maps are saved as .nii.gz .