Error in eval(ei, envir) : Unsupported file type -> linda_predict.R

[mawnprl]

I am just getting started using LINDA and have seemingly gotten through the installation process, including all the necessary components (R, ANTsR, ITKR, CMake). However, when I try to run I get the following error message:

source('/Users/AliceWhite/Desktop/LINDA/LINDA-master/linda_predict.R') 15:23 Starting LINDA v0.2.7 ... Loading required package: ANTsRCore

Attaching package: ‘ANTsRCore’

The following object is masked from ‘package:stats’:

var

The following objects are masked from ‘package:base’:

all, any, apply, max, min, prod, range, sum

randomForest 4.6-12 Type rfNews() to see new features/changes/bug fixes. Error in eval(ei, envir) : Unsupported file type -> linda_predict.R

I get the following with sessionInfo():

sessionInfo() R version 3.4.3 (2017-11-30) Platform: x86_64-apple-darwin15.6.0 (64-bit) Running under: macOS Sierra 10.12.6

Matrix products: default BLAS: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRblas.0.dylib LAPACK: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRlapack.dylib

locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages: [1] stats graphics grDevices utils datasets methods base

other attached packages: [1] randomForest_4.6-12 ANTsR_0.6.1 ANTsRCore_0.4.8

loaded via a namespace (and not attached): [1] Rcpp_0.12.14 rsvd_0.9 lattice_0.20-35
[4] psych_1.7.8 grid_3.4.3 magic_1.5-6
[7] nlme_3.1-131 magrittr_1.5 Matrix_1.2-12
[10] ITKR_0.4.12.4 tools_3.4.3 foreign_0.8-69
[13] RcppEigen_0.3.3.3.1 parallel_3.4.3 compiler_3.4.3
[16] mnormt_1.5-5

I have been unable to troubleshoot this on my own or by searching forums. Any suggestions on how to proceed would be greatly appreciated.

[dorianps]

Thank you for bringing the issue here.

I have little time today and tomorrow to look into this. But before that, did you get the full release of LINDA (500Mb) or did you just get the Github download (45Mb). From your logs looks like you only got the Github download. The right link to download is: https://github.com/dorianps/LINDA/releases/download/0.2.7/LINDA_v0.2.7.zip

Is my understanding correct that you never see the file selection window or anything on command line to ask for the T1 of your patient?

[mawnprl]

Hi there,

Sorry for the delay, its been a busy morning. I did download the full release of LINDA (not the github download). It is also correct that I do not see a file selection window or command line option to ask for the T1 image.

Thanks much!

On Jan 24, 2018, at 9:18 PM, dorianps notifications@github.com<mailto:notifications@github.com> wrote:

Thank you for bringing the issue here.

I have little time today and tomorrow to look into this. But before that, did you get the full release of LINDA (500Mb) or did you just get the Github download (45Mb). From your logs looks like you only got the Github download. The right link to download is: https://github.com/dorianps/LINDA/releases/download/0.2.7/LINDA_v0.2.7.zip

Is my understanding correct that you never see the file selection window or anything on command line to ask for the T1 of your patient?

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHubhttps://github.com/dorianps/LINDA/issues/6#issuecomment-360339489, or mute the threadhttps://github.com/notifications/unsubscribe-auth/AiINXdUIMy9LeSA5CJdAUJSQo_N7PMlvks5tN-RegaJpZM4RsJQn.

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[dorianps]

Closing. Reopen of not resolved yet.