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dosorio / mtProportion

Supporting information for 'Systematic determination of the mitochondrial proportion in human and mice tissues for single-cell RNA sequencing data quality control'
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Ribosomal genes? #1

Open royfrancis opened 3 years ago

royfrancis commented 3 years ago

This is great! Thank you for this study! This has been very helpful. Any plans to do something for ribosomal genes?

dosorio commented 3 years ago

Hi @royfrancis, we have developed rPanglaoDB, an R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database. This tool can be used to perform meta-analysis over the datasets in PanglaoDB. Here is the citation: Daniel Osorio, Marieke L Kuijjer, James J Cai, rPanglaoDB: an R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database, Bioinformatics, 2021;, btab549, https://doi.org/10.1093/bioinformatics/btab549