Open gebdu opened 1 year ago
head(sc) SRA SRS Tissue 267.1 SRA526435 SRS1915125 Cortex, hippocampus and subventricular zone 267.2 SRA526435 SRS1915125 Cortex, hippocampus and subventricular zone 267.3 SRA526435 SRS1915125 Cortex, hippocampus and subventricular zone 267.4 SRA526435 SRS1915125 Cortex, hippocampus and subventricular zone 267.5 SRA526435 SRS1915125 Cortex, hippocampus and subventricular zone 267.6 SRA526435 SRS1915125 Cortex, hippocampus and subventricular zone Protocol Species Cluster Cells Cell Type 267.1 10x chromium Mus musculus 0 1731 Unknown 267.2 10x chromium Mus musculus 1 907 Unknown 267.3 10x chromium Mus musculus 2 822 Unknown 267.4 10x chromium Mus musculus 3 592 Unknown 267.5 10x chromium Mus musculus 4 567 Unknown 267.6 10x chromium Mus musculus 5 547 Unknown counts <- getSamples(sra = 'SRA526435')
|++++++++++++++++++++++++++++++++++++++++++++++ | 91% ~08s Error in url(paste0("https://panglaodb.se/data_dl.php?sra=", X[1], "&srs=", : all connections are in use In addition: There were 50 or more warnings (use warnings() to see the first 50)
options(panglao_concurrent = 10) counts <- getSamples(sra = 'SRA526435')
| | 0 % ~calculating Error in url(paste0("https://panglaodb.se/data_dl.php?sra=", X[1], "&srs=", : all connections are in use
options(panglao_concurrent = 1) counts <- getSamples(sra = 'SRA526435')
| | 0 % ~calculating Error in url(paste0("https://panglaodb.se/data_dl.php?sra=", X[1], "&srs=", : all connections are in use
Never could solve this problem even suing 3 different workstation from 3 different places. Any idea?
counts <- getSamples(sra="SRA691388", srs="All", specie = "Homo sapiens") Error in validObject(.Object) : invalid class “LogMap” object: Duplicate rownames not allowed
counts <- getSamples(sra="SRA691388", srs="All", specie = "Homo sapiens") |++++++++++++++++++++++++++++++++++++++++++++++++++| 100% elapsed=03s
Error in experimentList[[1]] : subscript out of bounds In addition: Warning messages: 1: In load(oConnection) : cannot open URL 'https://panglaodb.se/data_dl.php?sra=SRA691388&srs=SRS3173555&filetype=R&datatype=readcounts': HTTP status was '403 Forbidden' 2: In load(oConnection) : cannot open URL 'https://panglaodb.se/data_dl.php?sra=SRA691388&srs=SRS3173556&filetype=R&datatype=readcounts': HTTP status was '403 Forbidden' 3: In load(oConnection) : cannot open URL 'https://panglaodb.se/data_dl.php?sra=SRA691388&srs=SRS3173557&filetype=R&datatype=readcounts': HTTP status was '403 Forbidden' 4: In load(oConnection) : cannot open URL 'https://panglaodb.se/data_dl.php?sra=SRA691388&srs=SRS3173558&filetype=R&datatype=readcounts': HTTP status was '403 Forbidden'