jenniferjiangkells
commented
2 months ago Lots of general models and foundation models will do the job but here are some domain specific ones. Might want to divide them up by the kinds of tasks they are suitable for, prioritising the use cases we have currently implemented.
llms
- meditron https://huggingface.co/epfl-llm/meditron-70b
- med-gemini
- med-PaLM
transformers
- ClinicalBERT https://github.com/uf-hobi-informatics-lab/ClinicalTransformerNER (not sure if on HF)
- GatorTron https://huggingface.co/UFNLP/gatortron-base/tree/main
- MedPhi-2 https://huggingface.co/bluesky333/medphi2
- EHRShot https://huggingface.co/StanfordShahLab/clmbr-t-base
spacy
- MedSpacy https://github.com/medspacy/medspacy
- SciSpacy https://allenai.github.io/scispacy/
- med7 https://huggingface.co/kormilitzin/en_core_med7_lg (yeah I know)
- medcat https://github.com/CogStack/MedCAT
Addresses #27