dotnetbio / bio

Bioinformatics library for .NET
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Add Parser For PacBio CCS BAM #1

Closed evolvedmicrobe closed 9 years ago

evolvedmicrobe commented 9 years ago

This adds a parser for the new PacBio CCS data BAM format. It wraps the already existing BAM files and converts the SAMAlignedSequence type into a PacBioCCSRead type for less memory storage and easier access. Tests to verify the behavior are included.