Open TayyabaQamar opened 7 years ago
// [2] Prepare data string seq = @"GACGCCGCCGCCACCACCGCCACCGCCGCAGCAGAAGCAGCGCACCGCAGGAGGGAAG"; seq.ToString(); Sequence sequence = new Sequence(Alphabets.DNA, seq);
// [3] Create and configure service handler EbiWuBlastHandler blastService = new EbiWuBlastHandler(); // NCBIBlastHandler blastService = new NCBIBlastHandler(); ConfigParameters configParams = new ConfigParameters(); configParams.UseBrowserProxy = true; blastService.Configuration = configParams; // [4] Define query. BlastParameters searchParams = new BlastParameters(); searchParams.Add("Program", "blastn"); searchParams.Add("Database", "em_rel"); searchParams.Add("Expect", "1e-10"); //searchParams.Add("Email", "YourAddress@YourInstitution"); // [5] create and submit request string jobID; try { jobID = blastService.SubmitRequest(sequence, searchParams); } catch (Exception ex) { Console.WriteLine("Service is not available."); Console.WriteLine(ex); return; } // [6] Wait for Ready status ServiceRequestInformation info = blastService.GetRequestStatus(jobID); if (info.Status != ServiceRequestStatus.Waiting && info.Status != ServiceRequestStatus.Ready) { Console.WriteLine("Service is not ready or waiting."); return; } int maxAttempts = 10; int attempt = 1; while (attempt <= maxAttempts && info.Status != ServiceRequestStatus.Error && info.Status != ServiceRequestStatus.Ready) { ++attempt; info = blastService.GetRequestStatus(jobID); Thread.Sleep( info.Status == ServiceRequestStatus.Waiting || info.Status == ServiceRequestStatus.Queued ? 20000 * attempt : 0); } // [7] Get results IList<BlastResult> results2 = blastService.FetchResultsSync(jobID, searchParams) as List<BlastResult>;
I'm running this code mentioned in MBF programming guide but it is giving me an error that sequence type parameter is required: Service not available
// [2] Prepare data string seq = @"GACGCCGCCGCCACCACCGCCACCGCCGCAGCAGAAGCAGCGCACCGCAGGAGGGAAG"; seq.ToString(); Sequence sequence = new Sequence(Alphabets.DNA, seq);
I'm running this code mentioned in MBF programming guide but it is giving me an error that sequence type parameter is required: Service not available