search

dotnetbio / bio

Bioinformatics library for .NET
Apache License 2.0
143 stars 49 forks source link

VCF parser #33

Open acesnik opened 6 years ago

acesnik commented 6 years ago

Are you planning to integrate a VCF parser, or is there another parser I could use for VCF files?

I see there's one in development over on this repository: https://github.com/evolvedmicrobe/Bio.VCF.

Thanks,

AC

evolvedmicrobe commented 6 years ago

That's the only C# parser I am aware of. It's more or less a direct port of the one available in picard (or hts now?), but it never quite hit the testing quality wanted for this repo.

acesnik commented 6 years ago

Sounds good. I started writing my own C# VCF parser a while back, and I'm in the need for one now. I definitely wouldn't mind hopping on this bandwagon and writing some unit tests for this one; it's much further along.

It seems like you have continuous integration set up in this repo, but I don't see a testing report (e.g. codecov, coveralls). Have you considered adding that integration?