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douglasyao / FR-Perturb

Factorize-Recover for Perturb-seq analysis (FR-Perturb)
GNU General Public License v3.0
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Run on conventional Perturb-seq #1

Open kiddo18 opened 1 year ago

kiddo18 commented 1 year ago

Hi! Just wondering if FR-Perturb can be run on 1-guide 1-cell conventional Perturb-seq dataset?

Also do you have any suggestions for plotting UMAP for cell-guide pair that works/gets good perturbation efficiency?

karlie002 commented 5 months ago

Hi, have you gotten the answer?

douglasyao commented 5 months ago

Yes, FR-Perturb can be run on 1-guide 1-cell conventional Perturb-seq - in fact, we make the claim that it outperforms other methods for these datasets.

The method has been recently updated so I recommend updating to the latest version.

On Wed, Jun 12, 2024 at 7:53 PM karlie002 @.***> wrote:

Hi, have you gotten the answer?

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