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dozmorovlab / HiCcompare

Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the analysis of multiple Hi-C matrices
https://dozmorovlab.github.io/HiCcompare/
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could not find function "hic_compare" #3

Closed RuiqinZheng closed 6 years ago

RuiqinZheng commented 6 years ago

Hi, I got some error messages when use the software, How can I solve this? maybe the reason is that I didn't install the package compelely?

hic.table = hic_compare(hic.table, Plot = TRUE) Error in hic_compare(hic.table, Plot = TRUE) : could not find function "hic_compare"

Best wishes!

RuiqinZheng commented 6 years ago

I hava solved the problem ! Thanks! But I hava another question: When the package compute the different interaction,Whether the effects of different sequencing depth were removed?

jstansfield0 commented 6 years ago

Assuming you normalized your data with hic_loess() then yes the effects of sequencing depth should be removed.