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dozmorovlab / multiHiCcompare

Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.
https://dozmorovlab.github.io/multiHiCcompare/
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How can we illustrate trans-differential interaction with multiHiCcompare? #14

Open Z-H-Zhang opened 1 year ago

Z-H-Zhang commented 1 year ago

How can we illustrate trans-differential interaction with multiHiCcompare?

mdozmorov commented 1 year ago

Not yet. It is a good idea, on our list. Help needed!

Z-H-Zhang commented 1 year ago

Not yet. It is a good idea, on our list. Help needed!

Thank you for your prompt reply. For identifying trans differential interactions, I suggest you refer to the following articles: https://pubmed.ncbi.nlm.nih.gov/34140314/ This article uses its own method to identify trans differential interaction.

LucasMcNU commented 4 months ago

I would also be interested in this functionality, if it gets added!