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dpeerlab
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ENVI
MIT License
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How can I use other algorithms (e.g., UMAP, PHATE) to do the dimensional reduction?
#73
zyll123
opened
3 weeks ago
0
Computing niches in cosmx data using fov as batch_key
#72
sarajimenez
opened
3 weeks ago
0
fix test req
#71
DoronHav
closed
1 month ago
0
Output st_data.obsm['COVET'] of scenvi.compute_covet has the shape nx64x64, irrespective of k and g
#70
KarolineHoller
opened
2 months ago
0
Replace COVET representation with NICER (NeighborIng Cells Expression…
#69
emmazchen
opened
3 months ago
0
Allow ENVI to cache COVET matrices on disk to avoid recomputing COVET and to enable larger datasets
#68
tddough98
opened
4 months ago
0
How do you deal with the square root of negative covariance terms?
#67
dangeles
opened
4 months ago
0
Is this algorithm suitable for analyzing 10X Visium data?
#66
EddieLv
opened
5 months ago
0
Issue with latent space embedding with new version of ENVI
#65
rmathieu25
opened
5 months ago
2
Log inp fix
#64
DoronHav
closed
6 months ago
0
Fix args to highly_variable_genes function in ENVI.py
#63
DoronHav
closed
6 months ago
0
CODEX (PhenoCycler) + scRNA-seq
#62
qu4drupole
closed
6 months ago
3
Handle cases where single cell data lacks genes present in spatial data
#61
LinearParadox
closed
6 months ago
2
[Question] Analyzing CosMx data
#60
ccruizm
closed
6 months ago
2
Fix typo in ENVI.py
#59
DoronHav
closed
6 months ago
0
Fix type hinting error in ENVI.py
#58
DoronHav
closed
6 months ago
0
fix typo
#57
DoronHav
closed
6 months ago
0
Question on computing niche cell type composition
#56
ankitbioinfo
opened
6 months ago
1
Fix typos and update docstrings in ENVI.py
#55
DoronHav
closed
7 months ago
0
Docs
#54
DoronHav
closed
7 months ago
0
format with black and ruff
#53
DoronHav
closed
7 months ago
0
fix yaml
#52
DoronHav
closed
7 months ago
0
Delete
#51
DoronHav
closed
7 months ago
0
fix typo in docs
#50
DoronHav
closed
7 months ago
0
fix docs typo
#49
DoronHav
closed
7 months ago
0
fix typo
#48
DoronHav
closed
7 months ago
0
delete html
#47
DoronHav
closed
7 months ago
0
fix docs
#46
DoronHav
closed
7 months ago
0
remove old dirs
#45
DoronHav
closed
7 months ago
0
fix readme
#44
DoronHav
closed
7 months ago
0
fix build
#43
DoronHav
closed
7 months ago
0
fix conf version
#42
DoronHav
closed
7 months ago
0
update readme
#41
DoronHav
closed
7 months ago
0
fix link
#40
DoronHav
closed
7 months ago
0
fix docs notebook
#39
DoronHav
closed
7 months ago
0
fix doc
#38
DoronHav
closed
7 months ago
0
fix tutorial
#37
DoronHav
closed
7 months ago
0
fix notebook
#36
DoronHav
closed
7 months ago
0
fix tutorial
#35
DoronHav
closed
7 months ago
0
yaml
#34
DoronHav
closed
7 months ago
0
fix yaml
#33
DoronHav
closed
7 months ago
0
add build
#32
DoronHav
closed
7 months ago
0
add pre build
#31
DoronHav
closed
7 months ago
0
fix doc src
#30
DoronHav
closed
7 months ago
0
Update docs
#29
Tobiaspk
closed
7 months ago
0
delete files
#28
DoronHav
closed
7 months ago
0
fix src
#27
DoronHav
closed
7 months ago
0
add src
#26
DoronHav
closed
7 months ago
0
fix index
#25
DoronHav
closed
7 months ago
0
add modules
#24
DoronHav
closed
7 months ago
0
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