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dpeerlab / Harmony

Harmony framework for connecting scRNA-seq data from discrete time points
GNU General Public License v2.0
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scikit-learn dependency #16

Open adamgayoso opened 4 years ago

adamgayoso commented 4 years ago

Hi all,

I just wanted to point out that this dependency should probably be scikit-learn.

https://github.com/dpeerlab/Harmony/blob/eca0771348e7f1b901f95d1a8fc68d95530e830c/setup.py#L34

ManuSetty commented 3 years ago

Thanks a lot for pointing this out Adam - we will have this fixed. Sorry for such a delayed response!

sarajimenez commented 1 year ago

Hi! Any chance you solved this dependency issue? otherwise, do you have any advise on how to get around it? Thank you so much :)

EamonCoughlan commented 10 months ago

Had this issue with trying to install direct via pip, followed by an error with fa2 when trying to install direct from the git repo via pip git+. The solution for anyone running into the same error was to first install fa2 via conda ('conda install -c conda-forge fa2') and then to install harmonyTS through pip git+.

hamidghaedi commented 9 months ago

@EamonCoughlan thank you so much for your comment! It worked for me .