int16 not suitable for fluidigm data

dpeerlab / Harmony

Harmony framework for connecting scRNA-seq data from discrete time points

GNU General Public License v2.0

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int16 not suitable for fluidigm data #3

Closed AnnaLaddach closed 4 years ago

AnnaLaddach commented 5 years ago

I'm using harmony to analyse fluidigm data - although it's working brilliantly now I've had to alter the int16 datatype in utils.load_from_csvs as some of our gene counts are too high to be saved as int16.

The data didn't fail to load initially, just gave me negative counts in the matrix, so thought I would flag this up.

Thanks!

Anna

ManuSetty commented 5 years ago

Thank you for flagging this! We will make sure to use int32 instead.