Update access of neighbor distances from Anndata

dpeerlab / Palantir

Single cell trajectory detection

https://palantir.readthedocs.io

GNU General Public License v2.0

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Update access of neighbor distances from Anndata #41

Closed ManuSetty closed 4 years ago

ManuSetty commented 4 years ago

Need a fix for deprecation warning

 self.func_ir.loc))
/home/ec2-user/anaconda3/envs/python3/lib/python3.6/site-packages/palantir/utils.py:43: FutureWarning: This location for 'distances' is deprecated. It has been moved to .obsp[distances], and will not be accesible here in a future version of anndata.
  kNN = temp.uns['neighbors']['distances']

ManuSetty commented 4 years ago

Fixed in a1b20c233bd7b441498ff1c85d6141f71a4fa968. Awaiting push to master