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dpeerlab / Palantir

Single cell trajectory detection
https://palantir.readthedocs.io
GNU General Public License v2.0
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Computing the neighborhood graph error #65

Closed noobugs closed 1 year ago

noobugs commented 2 years ago

Thanks for creating such a great tool! I tested with my data following the tutorial step by step, however, when I run "sc.pp.neighbors(adata, n_neighbors=10, n_pcs=40)" always got the same err: "OMP: Info #276: omp_set_nested routine deprecated, please use omp_set_max_active_levels instead." I can't find a way to move forward, could you please help to check? Thank you so much!

ManuSetty commented 2 years ago

This looks like a environment issues. Can you perhaps try by rebuilding your conda environment.?