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dpeerlab / Palantir

Single cell trajectory detection
https://palantir.readthedocs.io
GNU General Public License v2.0
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Do we need to do MAGIC imputation? #96

Closed st4302 closed 1 year ago

st4302 commented 1 year ago

I analyzed my data using scanpy but the instructions that I found here (https://scanpy.readthedocs.io/en/stable/generated/scanpy.external.tl.palantir.html#) does not seem to include the MAGIC imputation. Is it ok to skip this step or should I follow the jypiter notebook on your website that includes the instructions for MAGIC?

Thank you

ManuSetty commented 1 year ago

Imputation is required for only for computing gene expression trends and not for Palantir itself.